Putting away save files Acekard 2?

I am using akaio on my acekard 2 and I have no problems saving my games... but they save into the same file and they just save right underneath the game itself... so its a pain scrolling through the save files looking for the other roms.

Is there any way I can make it so the saves go to a different file or at least to the bottom of the game list?

Also if I change the name of a rom to get rid of the extra extensions and numbers... with my saves still work with it? Can I change the file names for them as well?