Just an update I saw from Exophase:
"Just so you all know.. well, I posted this in the main page comments but a lot of these crashes are happening because of a stupid bug I introduced shortly before releasing, and I have confirmed that fixing it fixes at least a lot of games (Pokemon Emerald, Zelda: Minish Cap)... but since I don't do one bugfix releases you'll have to wait for me to do some other stuff too. I'll try not to take too long."