Once again, a noob who isn't getting an answer because of asking a ridiculous question. Well here's the answer.
Yes, it is safe. I'm running on the latest firmware and have yet to have a single problem. In fact, Nintendo sends me the daily "You've been playing X hours of Y channel." update telling me how long I've used Homebrew along with the official channels. Although Nintendo knows about Homebrew and can see who is running it, and how much, at this point in time they aren't stopping us from doing it. It is safe for this update, and should be for future updates.
If there is a problem it will be dealt with when it arises, but nothing drastic should occur.
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