We've determined that to fix this, simply set it to No Vblank for a second, go back in game, and then change it back. No clue why this is.
Greenwing, I'm not really sure what the issue is in your case. You've patched it with DLDI, correct? Have you tried tapping the "start" button instead of pressing the Start button on the DS? Does this happen in v0.4 as well?
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