1. Not that I know of. You'll have to convert them.
2. Which converter, and which output format?
3. Tuna-viDS can play *.avi files yes, but you have to have them specially formatted first. This is the format:
More info about it is at http://chishm.drunkencoders.com/tuna-vids/index.html* Video: 256px wide, up to 192px tall, up to 12fps, Xvid encoded, non-interlaced
* Audio: Mono MP3
* Container: AVI with chunk index, video must be the first stream (fourcc 00dc)
You can use SUPER to convert this or you can use ffmpeg like he suggests.
4. No clue, sorry.
6. Usually you just need to read the "ReadMe" files. For instance, the ReadMe file for SNEmulDS tells you that SNES games should go into a folder called "SNES" while snemul.cfg goes on the root of your card, and SNEmulDS.nds can be anywhere. Some emulators require you to package the games into the *.nds file. Some let you load from the filesystem. There really isn't a "general rule" you can go by since each does things differently.
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